conduitR is an R package that provides tools for metaproteomics analysis using conduit and conduit-GUI. It offers a comprehensive suite of functions for processing, analyzing, and visualizing metaproteomics data. These functions are designed to be used in conjunction with the conduit and conduit-GUI packages, or independently for custom analyses.
Interactive heatmaps with annotations
PCA biplots with customizable aesthetics
Taxonomic barplots
Taxonomic heat trees
Volcano plots for differential expression
KEGG pathway visualization
Feature-specific plots
Custom plot aesthetics
Miscellaneous
Logging functions.
You can install the development version of conduitR from GitHub:
r, eval = FALSE # install.packages("devtools") devtools::install_github("baynec2/conduitR")
This is a work in progress, will update in the future.